A method and system for analysis of immunoassays, and more specifically to an improved analysis of chromatographic assays, often referred to as a lateral flow assay is disclosed. These assays commonly employ a test strip utilizing visible particles as the labels for the analytes to be detected, where, as an additional feature, the analytical strip is removable for reading the quantity of analytes captured therein and for archival purposes. An image of the test strip is analyzed automatically.