An internal combustion engine is selectably operable in one of homogeneous charge compression ignition (HCCI) mode with low lift intake and exhaust valve profiles and spark ignition (SI) mode with high lift intake and exhaust valve profiles. Transition from a current combustion mode to a desired combustion mode includes phase adjusting the one of the intake and exhaust valves exhibiting a greater effect upon an effective cylinder volume for a given phase adjustment in the desired combustion mode based upon a desired phasing for the desired combustion mode prior to lift adjusting the one of the intake and exhaust valves and adjusting the other of the intake and exhaust valves.