A bicycle drive apparatus includes a bicycle crankset, a bicycle transmission, a drive assistance electric motor and a microcomputer. The microcomputer includes an output control section, a gear shift feasibility determining section and a gear shift control section. The output control section controls an output of the drive assistance electric motor. The gear shift feasibility determining section determines if an output condition of the bicycle crankset satisfies a gear shift allowable condition. The gear shift control section receives a gear shift request, instructs the output control section to at least one of stop the output of the drive assistance electric motor and decrease the output of the drive assistance electric motor, and instructs the transmission to execute a gear shifting operation upon the gear shift permission determining section determining that the gear shift allowable condition is satisfied.