A system and method of cleaning and scrubbing contaminants, including sulfides, from an unclean or raw gas includes one or more containers, each of which include a gas permeable receptacle or bag containing an appropriate gas scrubbing medium for removing the contaminants from the gas stream. A gas extraction device is adapted via inserted into the gas scrubbing medium with the gas permeable receptacle wherein the gas extraction device is connected to at least one gas outlet port in the container. A series of containers can be used wherein the containers are connected sequentially to remove the gas. A system for bypassing one of the plurality of containers in order to clean out the container while the gas cleaning mechanism is still in operation is also described.