A method and system for communicating signal data in GNSS system using LDPC convolution codes. The method involves, at transmitting end, formatting signal data into a set of subframes. Each subframe of the signal data can be encoded in accordance with a parity check matrix defining Tanner graph representation of LDPC convolution codes. The encoded signal data can be interleaved and added with a Sync word field to transmit an interleaved block of encoded signal data through a communication channel. At receiving end, the interleaved block of encoded signal data can be de-interleaved after it is received from the communication channel. The Tanner Graph shows the connectivity in time invariant parity check matrix. A message passing technique is used to decode the LDPCCC encoded message. The encoded signal data can be decoded through the message passing technique to obtain the signal data primitively transmitted at the transmitting end. Such method and system are capable of achieving error free performance over the GNSS communication channel for effective navigation data communication, and also provide good BER performance over a wide range of Signal-to-Noise ratios.