A tower control system, under an indexing mode of operation, receives a first signal from rail yard equipment. In response to the first signal, the tower control system establishes a positioning mode of operation. Under the positioning mode of operation, and in response to actuation of an interface of the tower control system, the tower control system sends a second signal to a lead powered rail vehicle of a consist. The second signal includes a first command to adjust a throttle setting of the lead powered rail vehicle, along with a second command to idle a throttle of any remote powered rail vehicle of the consist.