An object of the invention is to remove effectively metallic contaminants adhering to the glass substrate surfaces without increasing roughness of the glass substrate surfaces in the glass substrate for a magnetic disk. In a manufacturing method of a glass substrate for a magnetic disk having a cleaning step of the glass substrate, the cleaning step comprising a cleaning treatment of contacting the glass substrate with an alkaline aqueous solution having a gluconate in concentration of not less than 0.05 wt % and not more than 2 wt % added thereto and a pH of not less than 9 and not more than 11 is appended.