A specimen transport system with magnetic damping and method for transporting specimens with magnetic damping are disclosed. A conveyance device transports sample carriers configured to carry specimen containers. One or more of the sample carriers include magnets. The system may also include a diverting arm having a magnet. When a first sample carrier is transported toward a second sample carrier, a first sample carrier magnet coupled to the first sample carrier repels a second sample carrier magnet coupled to the second sample carrier. When a sample carrier is transported toward a diverting arm, a diverting arm magnet of the diverting arm repels a sample carrier magnet of the sample carrier.