A Vertically Integrated Aquaculture System for producing high quality consumer seafood products at a significantly reduced cost. The Vertically Integrated Aquaculture System includes at least one aquaculture grow-out module for containing an aquaculture species, a feed handling system for distributing feed to the aquaculture species located in the aquaculture grow-out module(s), an aquaculture species moving system for routing the aquaculture species at least out of the aquaculture grow-out module(s), and a processing system for processing the aquaculture species after harvesting from the aquaculture grow-out module(s).