A liquid ejecting apparatus includes: a liquid ejecting head that ejects liquid which is supplied from two or more liquid housing portions that house liquid; two or more housing portion side flow paths which are provided to correspond with each of the liquid housing portions and which supply liquid from an upstream side that is a side of the liquid housing portions to a downstream side; and a flow mechanism which is capable of causing liquid to flow in the housing portion flow paths, and the flow mechanism causes liquid to flow in a housing portion side flow path corresponding with a liquid housing portion that does not supply liquid for a predetermined time set in advance among the housing portion side flow paths.