An air intake manifold for an engine includes an air inlet to receive a flow of compressed charge air, and multiple runners to deliver cooled compressed charge air to corresponding combustion cylinders of the engine. A charge air cooler is arranged within the intake manifold between the air inlet and the runners, and includes a first core section and a second core section. The first and second core sections are arranged fluidly in parallel with respect to the flow of compressed charge air, so that the charge air is divided into a first portion that is substantially directed through the first core section to a first subset of the runners, and a second portion that is substantially directed through the second core section to a second subset of the runners.