A method for compiling an original application written in an intermediate code, in which the original application is executed by means of a virtual machine. The method supplies a native application having a native binary code. The method includes: extracting at least one intermediate code instruction at least one corresponding function input point; a first step of compiling the intermediate code of the application to a code that includes control flow management and calls said at least one input point of each function implementing the instructions of the intermediate code; and a second step of compiling the compiled application code and intermediate code functions supplying the optimised native application.