A fuel cell system includes an IG switch disposed between a 14V battery and a controller. The fuel cell system also includes a start switch disposed independently of the IG switch. Upon detection of the ON state of the start switch, the controller outputs an FC start instruction to an FC auxiliary device. Moreover, an FC inverter switch is disposed between the 14V battery and the FC auxiliary device. Through the function of the controller, power supply from the 14V battery to the FC auxiliary device is suspended for a period from when a wait time, which is predeterminedly set from the moment when the IG switch is turned ON, has elapsed to the moment when the start switch is turned ON, during a wait period between the moment when the IG switch is turned ON and the moment when the start switch is turned ON.