There is provided a method of manufacturing liquid jetting apparatus which includes a nozzle plate in which a nozzle configured to jet a liquid is formed, and a channel structure in which a liquid channel communicating with the nozzle is formed. The method of manufacturing liquid jetting apparatus includes, removing a part of a metal layer of a stacked body in which a resin layer and the metal layer are stacked without intervening an adhesive, to expose the resin layer partially, forming the nozzle in the resin layer such that, the nozzle opens in an area exposed through the metal layer, and joining the stacked body which is to be the nozzle plate in a case that the nozzle is formed, to the channel structure.