An intelligent input method and intelligent input system are disclosed. The intelligent input system includes an electronic device and an input device. The intelligent input method comprises the following steps. Firstly, a touch input is received through an input interface of an input device. Then, plural control areas on the input interface are defined according to a touch position of the touch input on the input interface. The plural control areas are respectively correlated with plural input functions of the input device. The intelligent input method allows the user to input or select a target object or browse a web page or operate any graphical user interface containing randomly-distributed objects in an electronic device such as an intelligent TV or a digital multimedia player. Consequently, the target object can be selected and inputted in an intelligent, quick and intuitive manner.