A method of automatic tooth segmentation, the method executed at least in part on a computer system acquires volume image data for either or both upper and lower jaw regions of a patient and identifies image content for a specified jaw from the acquired volume image data. For the specified jaw, the method estimates average tooth height for teeth within the specified jaw, finds a jaw arch region, detects one or more separation curves between teeth in the jaw arch region, defines an individual tooth sub volume according to the estimated average tooth height and the detected separation curves, segments at least one tooth from within the defined sub-volume, and displays the at least one segmented tooth.