Disclosed is an inter-layer path provisioning method and system in a multilayer network that may set, in response to a path setting request of an operator, an upper layer path to be interlocked with an upper layer path computation unit, set, separately from the setting of the upper layer path, a lower layer path to be interlocked with a lower layer path computation unit, and perform a connection between the set upper layer path and the set lower layer path, so that inter-layer path setting may be readily performed in a multilayer transport network.