Systems and methods of token-based protection for remote resources are disclosed. For example, a method may include receiving, at a second computing device, a configuration message from a first computing device. The configuration message includes information to configure a resource at the second computing device. For example, the resource may be a cloud transcoder. The method also includes generating, at the second computing device, a short token that enables the first computing device to access the resource. For example, the short token may be used to receive a long token that can be used to send application programming interface (API) requests to the cloud transcoder.