Systems and methods for employing chemoautotrophic micro-organisms to capture carbon from industrial waste are provided. An exemplary system comprises an industrial source, such as a cement plant, and a bioreactor including the micro-organisms. The bioreactor is fed the waste stream from the source, which provides carbon to the micro-organisms, and is also fed hydrogen, from which the micro-organisms derive their energy. Additional or alternative carbon can be provided from a gasifier fed an organic feedstock. The carbon provided to the micro-organisms is converted into chemical products which can be recovered from the bioreactor. Hydrogen can be produced by electrolysis using electricity generated by a renewable energy source.