A method of calibrating a printer using a reflective scanner is disclosed. Because the reflective scanner used for calibration may only be able to accurately measure a limited density range that is less than the full density range of the printer, some information from the reflective scanner is disregarded or deemphasized during the calibration process. A calibration page is printed and scanned. Lookup tables (LUTs) that comprise the printer calibration values are updated based on adjustments calculated from the scanner for density regions where the scanner produces relatively accurate measurements, but updated based on the preexisting settings for density regions where the scanner produces relatively inaccurate measurements. In transitions regions between accurate and inaccurate regions, the LUTs are adjusted based on a combination of measurements from the scanner and the preexisting settings.