The present invention provides a robust and efficient process for reducing the cloud point of biodiesel fuel in which clathrates are formed from saturated fatty acid components as solvent is evaporated from a mixture of urea, methanol and fatty acid esters. The process speed can be fast, and is governed by the speed with which urea can be brought into clathrate forming contact with the fatty acid esters in the first instance, and then by the speed that solvent can be evaporated. Advantageously, substantially all of the solvent can be evaporated as pure solvent, which enhances process efficiencies and reduces cost. Additionally, substantially all of the urea can be used to form clathrates, further maximizing process efficiency.