A method for determining proper wiring of multiple three-phase motors in a refrigeration system is disclosed. The method may include energizing a plurality of three-phase motors with a first input phase rotation and recording performance data, energizing the plurality of three-phase motors with a second input phase rotation and recording the performance data, evaluating the performance data and determining if each of three-phase motors is properly wired, operating the refrigeration system in a normal mode if all of the three-phase motors are properly wired, or operating the refrigeration system in a less efficient mode if at least one three-phase motor is improperly wired.