A robotic catheter system includes a robotic controller; a robotic manipulator; and in input controller. The input controller includes communication circuitry configured to receive a signal from a user input device; memory having stored therein a plurality of device drivers associated with a different type of input device or a differently configured input device; and a processor configured to recognize an input device connected with the communications circuitry, load a device driver according to the recognized input device, initialize the input device, and/or one of reject and notify an end user, and deliver an image to a display or graphical user interface.