An operating system may be configured using a control flow graph that defines relationships between each executable module. The operating system may be configured by analyzing an application and identifying the operating system modules called from the application, then building a control flow graph for the configuration. The operating system may be deployed to a server or other computer containing only those components identified in the control flow graph. Such a lightweight deployment may be used on a large scale for datacenter servers as well as for small scale deployments on sensors and other devices with little processing power.