A banknote management system 1 includes a banknote handling apparatus 2 having stackers for stacking banknotes, the banknote handling apparatus sorting the banknotes based on sorting conditions set for the respective stackers, and sequentially stacking the sorted banknotes in the stackers corresponding to the sorting conditions; and a banknote management apparatus 3 managing the banknote handling apparatus. The system includes a DB registration specifying unit 32B specifying a stacker 11 a DB registration necessity of which is specified among the stackers; a banknote detailed information creating unit 37B creating banknote detailed information for recognizing a banknote that is stacked in the stacker a DB registration of which is set to be necessary; and a DB control unit 37D registering the banknote detailed information in a database 33. The system can minimize a memory capacity of the database and a volume of banknote detailed information to be registered in the database.