A method provides for operating an engine configured to use a plurality of differing fuels. The method includes determining a fuel combustion ratio of the plurality of the fuels associated with at least one engine cylinder of the engine based at least in part on one or more of a plurality of characteristic profiles. This maintains one or more of a plurality of actual values associated with usage of the plurality of fuels relative to defined corresponding threshold values. The fuel combustion ratio includes a ratio of the plurality of fuels to be delivered to the at least one engine cylinder. A fuel delivery system delivers the plurality of fuels to the at least one engine cylinder based on the fuel combustion ratio.