A method for operating an engine system is described herein. The method includes moving a plurality of vanes in a variable geometry turbocharger toward a closed position in response to tip-out and after moving the plurality of vanes toward the closed position, moving an EGR valve from a fully closed position toward an open position in response to tip-in, the EGR valve in fluidic communication with an exhaust sub-system upstream of the turbine. The method further includes, after moving the EGR valve toward an open position, moving the plurality of vanes based on one or more of a driver-requested torque, engine speed, and engine temperature.