A method and system for performing network transfer adaptive optimization in a large-scale parallel computing system. The method of network transfer adaptive optimization includes forming a message to be transferred through the network based on obtained information related to a task executed by computing nodes, wherein the message includes identification information of the computing nodes to perform data transfer and corresponding sink nodes, and an amount of data the computing nodes to transfer to the corresponding sink nodes; transferring the message to a network layer; and forming a new data transfer pattern for data transfer between the computing nodes and the corresponding sink nodes in accordance with the received message.