Provided is a process of operating a zero-knowledge encrypted database, the process including: obtaining a request for data in a database stored by an untrusted computing system, wherein the database is stored in a graph that includes a plurality of connected nodes, each of the nodes including: an identifier, accessible to the untrusted computing system, that distinguishes the respective node from other nodes in the graph; and an encrypted collection of data stored in encrypted form, wherein: the untrusted computing system does not have access to an encryption key to decrypt the collections of data, the encrypted collections of data in at least some of the plurality of nodes each include a plurality of keys indicating subsets of records in the database accessible via other nodes in the graph and corresponding pointers to identifiers of the other nodes.