A protected membrane roof system for installation on a roof decking comprising an upper insulation board having an upwardly-facing upper board top surface and an opposite downwardly-facing upper board bottom surface and at least one through-hole communicating therebetween, a ballast material positioned over the upper insulation board, a netting positioned over the ballast material, and at least one fastener assembly having a base seated substantially adjacent the upper board bottom surface, a rod extending substantially vertically from the base of sufficient size so as to extend through the through-hole of the upper insulation board, the ballast material, and the netting, and a cap engaged with the rod above the netting, whereby the wind uplift resistance of the protected membrane roof system is improved and scour of the ballast material is reduced by effectively anchoring the netting to the upper insulation board beneath the ballast material.