A wastewater treatment system is provided having a reactor, first and second bio media and an aeration system. The first bio medium is located proximate an inlet end of the reactor and extends vertically between a top water level and the reactor's floor. The second bio medium is located proximate an outlet end of the reactor and extends vertically between a bottom water level and the reactor's floor. The media are adapted for retaining solids within the reactor as clarified water is withdrawn after treatment. The first bio media is further adapted to act as a baffle thereby causing wastewater to flow generally uniformly into a primary reactor zone. The aeration system includes a plurality of diffusers, some of which may be located adjacent or underneath the bio media and are adapted for promoting the shaking the bio media when activated in order dislodge excessive biomass therefrom.