Provided is a boot seal for a variable compression ratio engine having an inner layer free from tears or creases. The boot seal comprises a boot body having a cylinder-attaching part, a crankcase-attaching part and a connecting part for connecting these parts, and a rigid plate disposed in at least one of the cylinder-attaching part and the crankcase-attaching part and having a through hole. The boot body comprises an outer layer formed by injection molding a rubber material, and an inner layer formed of fluorine-containing rubber. An injection gate for the outer layer is located at a portion of the outer layer opposing the rigid plate. Both an outer surface and an inner surface of at least a portion of the rigid plate having the through hole are covered with the rubber material supplied from the injection gate.