Invention Grant
- Patent Title: Bambam: parallel comparative analysis of high-throughput sequencing data
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Application No.: US13373550Application Date: 2011-11-18
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Publication No.: US09646134B2Publication Date: 2017-05-09
- Inventor: John Zachary Sanborn , David Haussler
- Applicant: John Zachary Sanborn , David Haussler
- Applicant Address: US CA Oakland
- Assignee: The Regents of the University of California
- Current Assignee: The Regents of the University of California
- Current Assignee Address: US CA Oakland
- Agency: Womble Carlyle Sandridge & Rice LLP
- Main IPC: G06F19/22
- IPC: G06F19/22 ; G06F19/20 ; G06F17/24 ; G06N7/00 ; G06F3/0484 ; G06F19/00 ; G06F19/28 ; G06F19/18 ; G06Q50/24
Abstract:
A differential sequence object is constructed on the basis of alignment of sub-strings via incremental synchronization of sequence strings using known positions of the sub-strings relative to a reference genome sequence. An output file is then generated that comprises only relevant changes with respect to the reference genome.
Public/Granted literature
- US20120066001A1 Bambam: Parallel comparative analysis of high-throughput sequencing data Public/Granted day:2012-03-15
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