Various methods and systems for protecting humans as well as individual objects from tornadoes and other naturally occurring dynamic atmospheric vortex structures are described. Active protective systems interact with such vortex structures leading to destabilization and destruction of the vortex structures. The energy required for the destabilization and destruction of the vortex structure is taken from the energy from the vortex structure itself. The method requires no external energy sources for destabilization and destruction of vortex structures such as tornadoes.