Disclosed is a magnetic resonance imaging apparatus that calculates a susceptibility map using a weighting image that reflects a phase variation with high accuracy. The weighting image is calculated from a phase image obtained from a complex image obtained by MRI. First, a region used in calculation of the phase variation is set as a calculation region, and then, a standard deviation or a variance of pixel values of the phase image in the calculation region is set as the phase variation. Further, the phase variation is converted into a weight that monotonically decreases in a broad sense as the phase variation increases to obtain the weighting image.