A reconfigurable logic array(RLA) uses pipeline control methods. A do-not-end step signal is communicated to a controller in response to a backpressure condition. In response, a program executing in the RLA is suspended. Source and sink elements are arranged with respective sensors that identify back pressure conditions at interfaces. The source or sink elements communicate a do-not-end step signal to the controller. Local memory interfaces and an interrupt buffer generate similar signals in response to other internal and external conditions. The controller coordinates pipelined control signals with a global counter that issues the control signals with an end-of-step signal broadcast throughout the RLA. When a number of loop iterations is known before execution of the loop instructions, the information is shared with source and sink elements and the controller, which operate accordingly in a limited mode. At appropriate times write-enable inputs of configuration registers are disabled.