A fuel cell system includes an auxiliary machine to be connected to a fuel cell, warm-up power control means for controlling generated power of the fuel cell by adjusting power supplied to the auxiliary machine during the warm-up of the fuel cell, and IV characteristic estimation means for temporarily reducing the power supplied to the auxiliary machine and estimating an IV characteristic of the fuel cell on the basis of at least two pairs of current values and voltage values at that time during the warm-up of the fuel cell.