A control method for a shifting mechanism of a vehicle includes determining whether or not an error signal is generated by a motor unit, when it is determined that an error signal is generated, determining whether or not a shift finger of the shifting mechanism is shifted to one of the shift positions, when it is determined that the shift finger is shifted to one of the shift positions in the step of determining whether or not the shift finger of the shifting mechanism is shifted to one of the shift positions, confirming a value of an end position by moving the shift finger to the end position of the shift position that is currently selected, and correcting a value of a position of the shift finger using the value of the end position confirmed in the step of confirming the value of the end position.