The present invention discloses a secondary control method and apparatus of parallel inverters in a micro grid, comprising: generating frequency and amplitude of fundamental voltage in the voltage instruction of inverter by droop control according to output voltage and output current of inverter to obtain a fundamental voltage instruction value; extracting voltage values and current values of a first and second AC signals from output voltage and output current of inverter, generating frequency instruction values of the first and second AC signals by droop control to obtain voltage instruction values of the first and second AC signals; regulating the output voltage of inverter according to the voltage instruction value of the first AC signal, the voltage instruction value of the second AC signal and the fundamental voltage instruction value.