A method and system for processing of images from an autonomous endoscopic capsule includes acquiring a video stream from the endoscopic capsule; detecting repeat frames; removing repeat frames from the video stream; adjusting a speed of play back of the video stream based on a value of possibility of skipping significant frames; detecting anomalies; marking frames with anomalies for further review by a physician; and displaying multiple images on a physician's desktop simultaneously in a chronological order in a form of a matrix.