Provided is a document file output apparatus capable of appropriately storing each document as different files depending on a difference in printing setting, even when printed materials which are to be different documents for each single sheet or every plurality of sheets are continuously read, a document file output method, and a computer readable medium storing a program for operating a computer as the document file output apparatus. The document file output apparatus each specifies the printing setting of each read printed material, for example, a layout, a difference in a size of the read printed material, presence or absence of framework printing, presence or absence of reduction printing, color/monochromatic setting, or image embedding, from the obtained image data, and outputs by dividing the document files before and after the read printed material in which the printing setting is changed.