An objection is to provide a technology by which a decline in the starting performance of a fuel cell system may be controlled in a low-temperature environment. A control method of a fuel cell system includes a temperature acquisition step of acquiring a temperature of the fuel cell at start-up of the fuel cell; and an exhaust gas control step of restricting, when the temperature of the fuel cell is below a predetermined value, a flow rate of an exhaust gas flowing into a flow path configuring portion that configures at least a part of a flow path of the exhaust gas of the fuel cell as compared to the flow rate of the exhaust gas flowing into the flow path configuring portion when the temperature of the fuel cell is equal to or less than the predetermined value.