Provided is a method of processing a Wideband Code Division Multiple Access (WCDMA) signal timing offset for a signal analyzer. The method includes estimating an integer multiple timing offset of WCDMA baseband sample data corresponding to an amount of at least one frame; generating a frequency domain signal which is time delayed corresponding to a fractional timing offset estimation resolution after generating the frequency domain signal by performing a Fast Fourier Transform (FFT) calculation on an already-known reference signal; converting each time-delayed frequency domain signal into a time domain signal by performing an Inverse Fast Fourier Transform (IFFT) calculation on each time-delayed frequency domain signal and calculating a correlation between an input signal from a position of the integer multiple timing offset and the time domain signal; and estimating a delay time leading to a maximum correlation as a fractional timing offset.