The present invention provides bio-electrochemical systems having various configurations for the treatment of water, wastewater, gases, and other biodegradable matter. In one aspect, the invention provides bio-electrochemical systems configured for treating wastewater while generating multiple outputs. In another aspect, the invention provides bio-electrochemical systems configured for improving the efficiency of electrodialysis removal systems. In yet another aspect, the invention provides bio-electro-chemical systems configured for use in banks and basins.