Embodiments of the present invention are directed to providing new systems and methods for using deep learning techniques to generate embeddings for high dimensional data objects that can both simulate prior art embedding algorithms and also provide superior performance compared to the prior art methods. Deep learning techniques used by embodiments of the present invention to embed high dimensional data objects may comprise the following steps: (1) generating an initial formal embedding of selected high-dimensional data objects using any of the traditional formal embedding techniques; (2a) designing a deep embedding architecture, which includes choosing the types and numbers of inputs and outputs, types and number of layers, types of units/nonlinearities, and types of pooling, for example, among other design choices, typically in a convolutional neural network; (2b) designing a training strategy; (2c) tuning the parameters of a deep embedding architecture to reproduce, as reliably as possible, the generated embedding for each training sample; (3) optionally deploying the trained deep embedding architecture to convert new high dimensional data objects into approximately the same embedded space as found in step (1); and optionally (4) feeding the computed embeddings of high dimensional objects to an application in a deployed embodiment.