One variation of a method for tracking fresh produce in a store includes: accessing a first hyper-spectral image, of a produce display in a store, recorded at a first time; extracting a first spectral profile from a first region of the first hyper-spectral image depicting a first set of produce units in the produce display; identifying a first varietal of the first set of produce units; characterizing qualities (e.g., ripeness, bruising, spoilage) of the first set of produce units in the produce display based on the first spectral profile; and, in response to qualities of the first set of produce units in the produce display deviating from a target quality range assigned to the first varietal, generating a prompt to audit the first set of produce units in the produce display.