A method for fabricating a field effect transistor with fin structure includes the following steps. A substrate having an ion well with a first conductivity type is provided, wherein the ion well has a first doping concentration. At least a fin structure disposed on the substrate is formed. At least a first ion implantation is performed to form an anti-punch doped region with first conductivity type between the substrate and the channel layer, wherein the anti-punch doped region has a third doping concentration higher than the first doping concentration. At least a channel layer disposed along at least one surface of the fin structure is formed after the first ion implantation is performed. A gate covering part of the fin structure is formed. A source and a drain disposed in the fin structure beside the gate are formed, wherein the source and the drain have a second conductivity type.