A cell culture control system includes a controller configured to control parameters of a culture fluid which exists in a processor in accordance with a control value which is preliminarily set, a generator configured to generate time-series data by using a concentration value of the metabolic substances in the culture fluid, the concentration value of the metabolic substances being detected by a sensor, an extractor configured to extract a characteristic point of the time-series data generated by the generator, and a control value setter configured to change the control value in accordance with the characteristic point extracted by the extractor.