The present disclosure relates to a controller and a controlling method of a switching power supply. The controller of the switching power supply is used for turning on and off a power transistor so that inductor current flows through an inductor which is connected in series with the power transistor. The controller includes a frequency-jittering signal generating circuit, a superimpose circuit and a first comparator. The frequency-jittering signal generating circuit generates a frequency-jittering signal variable over time. The superimpose circuit superimposes the frequency-jittering signal on a sampling signal of the inductor current to generate a superimposed signal. The first comparator compares the superimposed signal with a control voltage to generate an OFF signal for turning off the power transistor. The controller of the switching power supply reduces conducted electromagnetic interference by a frequency-jittering control on the sampling signal of the inductor current.