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公开(公告)号:US10093974B2
公开(公告)日:2018-10-09
申请号:US15621341
申请日:2017-06-13
Applicant: Life Technologies Corporation
Inventor: Joseph Beechem , Theo Nikiforov , Vi-En Choong , Xinzhan Peng , Guobin Luo , Cheng-Yao Chen , Michael Previte
IPC: C12N9/12 , C12Q1/6869 , C07H19/20 , G01N21/64 , G01N33/58 , C12N9/96 , C12Q1/6818
Abstract: Provided herein are systems and methods for nucleotide incorporation reactions. The systems comprise polymerases having altered nucleotide incorporation kinetics and are linked to an energy transfer donor moiety, and nucleotide molecules linked with at least one energy transfer acceptor moiety. The donor and acceptor moieties undergo energy transfer when the polymerase and nucleotide are proximal to each other during nucleotide binding and/or nucleotide incorporation. As the donor and acceptor moieties undergo energy transfer, they generate an energy transfer signal which can be associated with nucleotide binding or incorporation. Detecting a time sequence of the generated signals, or the change in the signals, can be used to determine the order of the incorporated nucleotides, and can therefore be used to deduce the sequence of the target molecule.
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公开(公告)号:US09976128B2
公开(公告)日:2018-05-22
申请号:US14754203
申请日:2015-06-29
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Peter Vander Horn , Theo Nikiforov , Guobin Luo , Mindy Landes , Daniel Mazur , Eileen Tozer , Tommie Lincecum
CPC classification number: C12N9/1252 , C12Q1/6846 , C12Q1/686 , C12Y207/07007
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragment thereof are provided that allow for nucleic acid amplification. In one aspect, the disclosure relates to modified polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In some aspects, the disclosure relates to modified polymerases useful for the generation of nucleic acid libraries or nucleic acid templates for use in various downstream processes. In some aspects, the disclosure relates to the identification of homologous amino acid mutations that can be transferred across classes or families of polymerases to provide novel polymerases with altered catalytic properties. In some aspects, the disclosure provides modified polymerases having enhanced catalytic properties as compared to a reference polymerase.
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公开(公告)号:US20180105805A1
公开(公告)日:2018-04-19
申请号:US15786223
申请日:2017-10-17
Applicant: Life Technologies Corporation
Inventor: John DAVIDSON , Theo Nikiforov , Guobin Luo
CPC classification number: C12N11/10 , C12N9/1241 , C12Q1/68 , G01N2333/9126
Abstract: In some embodiments, the disclosure relates generally to methods as well as related compositions, systems, kits and apparatus comprising linking proteins to target compounds and/or to locations of interest using tethers. For example, the tether can be used to link the protein to a target compound, for example, to link an enzyme to a substrate. Similarly, the tether can be used to link the protein at or near a desired location on a surface. In one group of embodiments, the tether includes a polynucleotide and the target compound or location on the surface includes another polynucleotide that is capable of hybridizing to the tether. In such embodiments, the tether can be used to link the protein to the target compound or location using nucleic acid hybridization.
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公开(公告)号:US09765310B2
公开(公告)日:2017-09-19
申请号:US14991230
申请日:2016-01-08
Applicant: Life Technologies Corporation
Inventor: Peter Vander Horn , Cheng-Yao Chen , Guobin Luo , Michael Previte , Jamshid Temirov , Theo Nikiforov , Zhaohui Zhou , Hongye Sun , Yufang Wang , Stefanie Yukiko Nishimura , Hongyi Wang , Marian Peris , Barnett Rosenblum , Michael Phelan
CPC classification number: C12N9/1252 , C12Q1/68 , C12Q1/6804 , C12Q1/6818 , C12Q1/6827 , C12Q1/6869 , C12Q1/6872 , C12Y207/07007 , G01N2500/00 , C12Q2565/632 , C12Q2563/137 , C12Q2563/107 , C12Q2565/30 , C12Q2537/157
Abstract: Provided herein are compositions and systems for use in polymerase-dependent, nucleotide transient-binding methods. The methods are useful for deducing the sequence of a template nucleic acid molecule and single nucleotide polymorphism (SNP) analyses. The methods rely on the fact that the polymerase transient-binding time for a complementary nucleotide is longer compared to that of a non-complementary nucleotide. The labeled nucleotides transiently-binds the polymerase in a template-dependent manner, but does not incorporate. The methods are conducted under any reaction condition that permits transient binding of a complementary or non-complementary nucleotide to a polymerase, and inhibits nucleotide incorporation.
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公开(公告)号:US09657281B2
公开(公告)日:2017-05-23
申请号:US14502201
申请日:2014-09-30
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Peter Vander Horn , Daniel Mazur , Theo Nikiforov , Mindy Landes , Eileen Tozer
CPC classification number: C12N9/1252 , C12Q1/686 , C12Q1/6869
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragments thereof are provided that allow for nucleic acid amplification. In some aspects, the disclosure provides modified polymerases having lower systematic error as compared to a reference polymerase. In one aspect, the disclosure relates to modified polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In some aspects, the disclosure relates to modified polymerases useful for the generation of nucleic acid libraries or nucleic acid templates. In some aspects, the disclosure relates to the identification of homologous amino acid mutations that can be transferred across classes or families of polymerases to provide novel polymerases with altered properties.
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公开(公告)号:US09567629B2
公开(公告)日:2017-02-14
申请号:US14284187
申请日:2014-05-21
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Theo Nikiforov
CPC classification number: C12Q1/6869 , C07H19/20 , C12N9/1241 , C12N9/1252 , C12N9/96 , C12Q1/6818 , C12Y207/07 , C12Y207/07007 , G01N21/6428 , G01N33/582 , G01N2021/6432
Abstract: Disclosed herein are conjugates comprising a biomolecule linked to a label that have biological activity and are useful in a wide variety of biological applications. For example, provided herein are labeled polymerase conjugates including a polymerase linked to one or more labels, wherein the conjugate has polymerase activity. Such conjugates can exhibit enhanced biological activity and/or superior detectability as compared to conventional labeled polymerases. Also disclosed herein are improved methods for preparing such conjugates, and methods and systems for using such conjugates in biological applications such as nucleotide incorporation, primer extension and single molecule sequencing.
Abstract translation: 本文公开了包含连接到具有生物活性并可用于多种生物应用的标签的生物分子的缀合物。 例如,本文提供了标记的聚合酶缀合物,包括与一个或多个标记物连接的聚合酶,其中缀合物具有聚合酶活性。 与常规标记的聚合酶相比,这种缀合物可以表现出增强的生物学活性和/或优异的可检测性。 本文还公开了制备这种缀合物的改进方法,以及在生物应用中使用这种缀合物的方法和系统,例如核苷酸掺入,引物延伸和单分子测序。
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公开(公告)号:US11447756B2
公开(公告)日:2022-09-20
申请号:US16825788
申请日:2020-03-20
Applicant: Life Technologies Corporation
Inventor: Peter Vander Horn , Cheng-Yao Chen , Guobin Luo , Michael Previte , Jamshid Temirov , Theo Nikiforov , Zhaohui Zhou , Hongye Sun , Yufang Wang , Stefanie Yukiko Nishimura , Hongyi Wang , Marian Peris , Barnett Rosenblum , Michael Phelan
IPC: C12Q1/68 , C12N9/12 , C12Q1/6827 , C12Q1/6869 , C12Q1/6872 , C12Q1/6804 , C12Q1/6818
Abstract: Provided herein are compositions and systems for use in polymerase-dependent, nucleotide transient-binding methods. The methods are useful for deducing the sequence of a template nucleic acid molecule and single nucleotide polymorphism (SNP) analyses. The methods rely on the fact that the polymerase transient-binding time for a complementary nucleotide is longer compared to that of a non-complementary nucleotide. The labeled nucleotides transiently-binds the polymerase in a template-dependent manner, but does not incorporate. The methods are conducted under any reaction condition that permits transient binding of a complementary or non-complementary nucleotide to a polymerase, and inhibits nucleotide incorporation.
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公开(公告)号:US11208636B2
公开(公告)日:2021-12-28
申请号:US16850629
申请日:2020-04-16
Applicant: Life Technologies Corporation
Inventor: Peter Vander Horn , Theo Nikiforov , Guobin Luo , Mindy Landes , Daniel Mazur , Eileen Tozer , Tommie Lincecum
IPC: C12N9/12 , C12Q1/6844 , C12Q1/686
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragment thereof are provided that allow for nucleic acid amplification. In one aspect, the disclosure relates to modified polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In some aspects, the disclosure relates to modified polymerases useful for the generation of nucleic acid libraries or nucleic acid templates for use in various downstream processes. In some aspects, the disclosure relates to the identification of homologous amino acid mutations that can be transferred across classes or families of polymerases to provide novel polymerases with altered catalytic properties. In some aspects, the disclosure provides modified polymerases having enhanced catalytic properties as compared to a reference polymerase.
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公开(公告)号:US11091746B2
公开(公告)日:2021-08-17
申请号:US16894469
申请日:2020-06-05
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Peter Vander Horn , Daniel Mazur , Theo Nikiforov , Mindy Landes , Eileen Tozer
IPC: C12N9/12 , C12Q1/6869 , C12Q1/686
Abstract: The present disclosure provides compositions, methods, kits, systems and apparatus that are useful for nucleic acid polymerization. In particular, modified polymerases and biologically active fragments thereof are provided that allow for nucleic acid amplification. In some aspects, the disclosure provides modified polymerases having lower systematic error as compared to a reference polymerase. In one aspect, the disclosure relates to modified polymerases useful for nucleic acid sequencing, genotyping, copy number variation analysis, paired-end sequencing and other forms of genetic analysis. In some aspects, the disclosure relates to modified polymerases useful for the generation of nucleic acid libraries or nucleic acid templates. In some aspects, the disclosure relates to the identification of homologous amino acid mutations that can be transferred across classes or families of polymerases to provide novel polymerases with altered properties.
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公开(公告)号:US11047004B2
公开(公告)日:2021-06-29
申请号:US16421284
申请日:2019-05-23
Applicant: LIFE TECHNOLOGIES CORPORATION
Inventor: Steven Menchen , Theo Nikiforov , Barnett Rosenblum
IPC: C12Q1/6869 , G01N27/414
Abstract: The present disclosure provide systems, compositions, methods, reagents, kits and products for extending a nucleic acid that includes incorporating a nucleotide residue at a terminus of a nucleic acid using a polymerase enzyme and at least one nucleotide, wherein the at least one nucleotide includes a thiophosphate moiety, and wherein the at least one nucleotide is resistant to hydrolysis by phosphatase. In some embodiments, the nucleotide incorporation can be conducted in the presence of a phosphatase. In some embodiments, the nucleotide incorporation can be conducted in the presence of at least on chelation moiety that is configured to bind an orthophosphate moiety.
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